Data description for a549 expression data

All human a549-specific RNA-seq data are downloaded from Dee2 database. Following our preprocessing pipeline, 13 datasets (the SRAStudy column) that includes 264 samples are retained to build the network. The summary information of each experiment is described in the following table.


SRR_accession SRP_accession Sample_name LibraryLayout BioProject download_path
SRR1655015 SRP049988 GSM1548048 PAIRED PRJNA267666 download
SRR1655020 SRP049988 GSM1548051 PAIRED PRJNA267666 download
SRR1655021 SRP049988 GSM1548051 PAIRED PRJNA267666 download
SRR1655022 SRP049988 GSM1548052 PAIRED PRJNA267666 download
SRR1655023 SRP049988 GSM1548052 PAIRED PRJNA267666 download
SRR1655024 SRP049988 GSM1548053 PAIRED PRJNA267666 download
SRR1655025 SRP049988 GSM1548053 PAIRED PRJNA267666 download
SRR1655026 SRP049988 GSM1548054 PAIRED PRJNA267666 download
SRR1655027 SRP049988 GSM1548054 PAIRED PRJNA267666 download
SRR1655028 SRP049988 GSM1548055 PAIRED PRJNA267666 download
SRR1655029 SRP049988 GSM1548055 PAIRED PRJNA267666 download
SRR1655031 SRP049988 GSM1548056 PAIRED PRJNA267666 download
SRR1655032 SRP049988 GSM1548057 PAIRED PRJNA267666 download
SRR1655033 SRP049988 GSM1548057 PAIRED PRJNA267666 download
SRR1655034 SRP049988 GSM1548058 PAIRED PRJNA267666 download
SRR1655035 SRP049988 GSM1548058 PAIRED PRJNA267666 download
SRR1655036 SRP049988 GSM1548059 PAIRED PRJNA267666 download
SRR1655037 SRP049988 GSM1548059 PAIRED PRJNA267666 download
SRR1655038 SRP049988 GSM1548060 PAIRED PRJNA267666 download
SRR1655039 SRP049988 GSM1548060 PAIRED PRJNA267666 download
SRR1655040 SRP049988 GSM1548061 PAIRED PRJNA267666 download
SRR1655041 SRP049988 GSM1548061 PAIRED PRJNA267666 download
SRR1655042 SRP049988 GSM1548062 PAIRED PRJNA267666 download
SRR1655043 SRP049988 GSM1548062 PAIRED PRJNA267666 download
SRR1655044 SRP049988 GSM1548063 PAIRED PRJNA267666 download
SRR1655045 SRP049988 GSM1548063 PAIRED PRJNA267666 download
SRR1655046 SRP049988 GSM1548064 PAIRED PRJNA267666 download
SRR1655047 SRP049988 GSM1548064 PAIRED PRJNA267666 download
SRR1655048 SRP049988 GSM1548065 PAIRED PRJNA267666 download
SRR1655049 SRP049988 GSM1548065 PAIRED PRJNA267666 download
SRR1655054 SRP049988 GSM1548068 PAIRED PRJNA267666 download
SRR1655055 SRP049988 GSM1548068 PAIRED PRJNA267666 download
SRR1655056 SRP049988 GSM1548069 PAIRED PRJNA267666 download
SRR1655057 SRP049988 GSM1548069 PAIRED PRJNA267666 download
SRR3872514 SRP078309 GSM2230822 PAIRED PRJNA328591 download
SRR3872515 SRP078309 GSM2230823 PAIRED PRJNA328591 download
SRR3872516 SRP078309 GSM2230824 PAIRED PRJNA328591 download
SRR3872517 SRP078309 GSM2230825 PAIRED PRJNA328591 download
SRR3872518 SRP078309 GSM2230826 PAIRED PRJNA328591 download
SRR3872519 SRP078309 GSM2230827 PAIRED PRJNA328591 download
SRR3872520 SRP078309 GSM2230828 PAIRED PRJNA328591 download
SRR3872521 SRP078309 GSM2230829 PAIRED PRJNA328591 download
SRR3872522 SRP078309 GSM2230830 PAIRED PRJNA328591 download
SRR3872523 SRP078309 GSM2230831 PAIRED PRJNA328591 download
SRR3872524 SRP078309 GSM2230832 PAIRED PRJNA328591 download
SRR3872525 SRP078309 GSM2230833 PAIRED PRJNA328591 download
SRR3979455 SRP077731 3_6h_A549_II PAIRED PRJNA322482 download
SRR3979526 SRP077731 M_6(3) PAIRED PRJNA322482 download
SRR3981088 SRP077731 3_6h_A549_III PAIRED PRJNA322482 download
SRR3981165 SRP077731 9_16h_A549_II PAIRED PRJNA322482 download
SRR3981185 SRP077731 M_16(1) PAIRED PRJNA322482 download
SRR3981187 SRP077731 M_6(1) PAIRED PRJNA322482 download
SRR3981188 SRP077731 9_16h_A549_I PAIRED PRJNA322482 download
SRR3982079 SRP077731 9_16h_A549_III PAIRED PRJNA322482 download
SRR4017871 SRP077731 Wt_6(1) PAIRED PRJNA322482 download
SRR4025867 SRP077731 Wt_6(2) PAIRED PRJNA322482 download
SRR4025868 SRP077731 Wt_6(3) PAIRED PRJNA322482 download
SRR4026108 SRP077731 Wt_16(1) PAIRED PRJNA322482 download
SRR4026156 SRP077731 Wt_16(2) PAIRED PRJNA322482 download
SRR4026160 SRP077731 92_6(1) PAIRED PRJNA322482 download
SRR4026600 SRP077731 92_6(2) PAIRED PRJNA322482 download
SRR4026602 SRP077731 92_6(3) PAIRED PRJNA322482 download
SRR4026620 SRP077731 92_16(1) PAIRED PRJNA322482 download
SRR4043670 SRP077731 3_6h_A549_I PAIRED PRJNA322482 download
SRR4448094 SRP092004 GSM2359203 PAIRED PRJNA350335 download
SRR4448095 SRP092004 GSM2359204 PAIRED PRJNA350335 download
SRR4448097 SRP092004 GSM2359206 PAIRED PRJNA350335 download
SRR4448098 SRP092004 GSM2359207 PAIRED PRJNA350335 download
SRR4448099 SRP092004 GSM2359208 PAIRED PRJNA350335 download
SRR4448101 SRP092004 GSM2359210 PAIRED PRJNA350335 download
SRR4448103 SRP092004 GSM2359212 PAIRED PRJNA350335 download
SRR4448105 SRP092004 GSM2359214 PAIRED PRJNA350335 download
SRR4448106 SRP092004 GSM2359215 PAIRED PRJNA350335 download
SRR4448107 SRP092004 GSM2359216 PAIRED PRJNA350335 download
SRR4448108 SRP092004 GSM2359217 PAIRED PRJNA350335 download
SRR5092960 SRP094854 ENCODE biosample ENCBS272CXK PAIRED PRJNA356880 download
SRR5092961 SRP094854 ENCODE biosample ENCBS178CIW PAIRED PRJNA356880 download
SRR5092970 SRP094854 ENCODE biosample ENCBS004IAZ PAIRED PRJNA356880 download
SRR5093029 SRP094854 ENCODE biosample ENCBS092WKJ PAIRED PRJNA356880 download
SRR5093039 SRP094854 ENCODE biosample ENCBS951SRH PAIRED PRJNA356880 download
SRR5093191 SRP094854 ENCODE biosample ENCBS331QMP PAIRED PRJNA356880 download
SRR5093192 SRP094854 ENCODE biosample ENCBS498NRD PAIRED PRJNA356880 download
SRR5093266 SRP094854 ENCODE biosample ENCBS561DRV PAIRED PRJNA356880 download
SRR5093317 SRP094854 ENCODE biosample ENCBS148XSC PAIRED PRJNA356880 download
SRR5093318 SRP094854 ENCODE biosample ENCBS736RMD PAIRED PRJNA356880 download
SRR5093319 SRP094854 ENCODE biosample ENCBS091SYA PAIRED PRJNA356880 download
SRR5093338 SRP094854 ENCODE biosample ENCBS146CRN PAIRED PRJNA356880 download
SRR5093339 SRP094854 ENCODE biosample ENCBS462FXS PAIRED PRJNA356880 download
SRR5093341 SRP094854 ENCODE biosample ENCBS721HGM PAIRED PRJNA356880 download
SRR5093367 SRP094854 ENCODE biosample ENCBS182KPQ PAIRED PRJNA356880 download
SRR5093369 SRP094854 ENCODE biosample ENCBS996NTP PAIRED PRJNA356880 download
SRR5093409 SRP094854 ENCODE biosample ENCBS700HNY PAIRED PRJNA356880 download
SRR5093451 SRP094854 ENCODE biosample ENCBS742QNT PAIRED PRJNA356880 download
SRR5093452 SRP094854 ENCODE biosample ENCBS731OAC PAIRED PRJNA356880 download
SRR5234760 SRP098973 GSM2478935 SINGLE PRJNA371550 download
SRR5234761 SRP098973 GSM2478936 SINGLE PRJNA371550 download
SRR5234762 SRP098973 GSM2478937 SINGLE PRJNA371550 download
SRR5234763 SRP098973 GSM2478938 SINGLE PRJNA371550 download
SRR5234764 SRP098973 GSM2478939 SINGLE PRJNA371550 download
SRR5234765 SRP098973 GSM2478940 SINGLE PRJNA371550 download
SRR5234766 SRP098973 GSM2478941 SINGLE PRJNA371550 download
SRR5234767 SRP098973 GSM2478942 SINGLE PRJNA371550 download
SRR5234768 SRP098973 GSM2478943 SINGLE PRJNA371550 download
SRR5234769 SRP098973 GSM2478944 SINGLE PRJNA371550 download
SRR5234770 SRP098973 GSM2478945 SINGLE PRJNA371550 download
SRR5234771 SRP098973 GSM2478946 SINGLE PRJNA371550 download
SRR5345519 SRP101948 GSM2537176 SINGLE PRJNA379282 download
SRR5345520 SRP101948 GSM2537177 SINGLE PRJNA379282 download
SRR5345521 SRP101948 GSM2537178 SINGLE PRJNA379282 download
SRR5345522 SRP101948 GSM2537179 SINGLE PRJNA379282 download
SRR5345523 SRP101948 GSM2537180 SINGLE PRJNA379282 download
SRR5345524 SRP101948 GSM2537181 SINGLE PRJNA379282 download
SRR5345525 SRP101948 GSM2537182 SINGLE PRJNA379282 download
SRR5345526 SRP101948 GSM2537183 SINGLE PRJNA379282 download
SRR5345527 SRP101948 GSM2537184 SINGLE PRJNA379282 download
SRR5345528 SRP101948 GSM2537185 SINGLE PRJNA379282 download
SRR5345529 SRP101948 GSM2537186 SINGLE PRJNA379282 download
SRR5345530 SRP101948 GSM2537187 SINGLE PRJNA379282 download
SRR5588473 SRP107867 MDA5-RNAseqF4 SINGLE PRJNA387035 download
SRR5588474 SRP107867 MDA5-RNAseqE4 SINGLE PRJNA387035 download
SRR5588475 SRP107867 MDA5-RNAseqC5 SINGLE PRJNA387035 download
SRR5588476 SRP107867 MDA5-RNAseqA7 SINGLE PRJNA387035 download
SRR5588477 SRP107867 MDA5-RNAseqH3 SINGLE PRJNA387035 download
SRR5588478 SRP107867 MDA5-RNAseqG3 SINGLE PRJNA387035 download
SRR5588479 SRP107867 MDA5-RNAseqF3 SINGLE PRJNA387035 download
SRR5588480 SRP107867 MDA5-RNAseqE3 SINGLE PRJNA387035 download
SRR5588481 SRP107867 MDA5-RNAseqD4 SINGLE PRJNA387035 download
SRR5588482 SRP107867 MDA5-RNAseqC4 SINGLE PRJNA387035 download
SRR5588483 SRP107867 MDA5-RNAseqB4 SINGLE PRJNA387035 download
SRR5588484 SRP107867 MDA5-RNAseqA4 SINGLE PRJNA387035 download
SRR5588485 SRP107867 MDA5-RNAseqE5 SINGLE PRJNA387035 download
SRR5588486 SRP107867 MDA5-RNAseqF5 SINGLE PRJNA387035 download
SRR5588487 SRP107867 MDA5-RNAseqG4 SINGLE PRJNA387035 download
SRR5588488 SRP107867 MDA5-RNAseqB7 SINGLE PRJNA387035 download
SRR5588489 SRP107867 MDA5-RNAseqH4 SINGLE PRJNA387035 download
SRR5588490 SRP107867 MDA5-RNAseqA5 SINGLE PRJNA387035 download
SRR5588491 SRP107867 MDA5-RNAseqB5 SINGLE PRJNA387035 download
SRR5588492 SRP107867 MDA5-RNAseqF6 SINGLE PRJNA387035 download
SRR5588493 SRP107867 MDA5-RNAseqE6 SINGLE PRJNA387035 download
SRR5588494 SRP107867 MDA5-RNAseqE2 SINGLE PRJNA387035 download
SRR5588495 SRP107867 MDA5-RNAseqF2 SINGLE PRJNA387035 download
SRR5588498 SRP107867 MDA5-RNAseqA3 SINGLE PRJNA387035 download
SRR5588499 SRP107867 MDA5-RNAseqB3 SINGLE PRJNA387035 download
SRR5588500 SRP107867 MDA5-RNAseqG2 SINGLE PRJNA387035 download
SRR5588501 SRP107867 MDA5-RNAseqH2 SINGLE PRJNA387035 download
SRR5588502 SRP107867 MDA5-RNAseqC3 SINGLE PRJNA387035 download
SRR5588503 SRP107867 MDA5-RNAseqD3 SINGLE PRJNA387035 download
SRR5588504 SRP107867 MDA5-RNAseqG5 SINGLE PRJNA387035 download
SRR5588505 SRP107867 MDA5-RNAseqH5 SINGLE PRJNA387035 download
SRR5588506 SRP107867 MDA5-RNAseqC7 SINGLE PRJNA387035 download
SRR5588507 SRP107867 MDA5-RNAseqD7 SINGLE PRJNA387035 download
SRR5588508 SRP107867 MDA5-RNAseqA6 SINGLE PRJNA387035 download
SRR5588509 SRP107867 MDA5-RNAseqH6 SINGLE PRJNA387035 download
SRR5588510 SRP107867 MDA5-RNAseqD6 SINGLE PRJNA387035 download
SRR5588511 SRP107867 MDA5-RNAseqC6 SINGLE PRJNA387035 download
SRR5588512 SRP107867 MDA5-RNAseqG6 SINGLE PRJNA387035 download
SRR5588513 SRP107867 MDA5-RNAseqC1 SINGLE PRJNA387035 download
SRR5588514 SRP107867 MDA5-RNAseqD1 SINGLE PRJNA387035 download
SRR5588515 SRP107867 MDA5-RNAseqA1 SINGLE PRJNA387035 download
SRR5588516 SRP107867 MDA5-RNAseqB1 SINGLE PRJNA387035 download
SRR5588517 SRP107867 MDA5-RNAseqG1 SINGLE PRJNA387035 download
SRR5588518 SRP107867 MDA5-RNAseqH1 SINGLE PRJNA387035 download
SRR5588519 SRP107867 MDA5-RNAseqE1 SINGLE PRJNA387035 download
SRR5588520 SRP107867 MDA5-RNAseqF1 SINGLE PRJNA387035 download
SRR5588521 SRP107867 MDA5-RNAseqB6 SINGLE PRJNA387035 download
SRR5588523 SRP107867 MDA5-RNAseqB2 SINGLE PRJNA387035 download
SRR5588524 SRP107867 MDA5-RNAseqD5 SINGLE PRJNA387035 download
SRR6147054 SRP119557 GSM2806559 SINGLE PRJNA413586 download
SRR6147055 SRP119557 GSM2806560 SINGLE PRJNA413586 download
SRR6147056 SRP119557 GSM2806561 SINGLE PRJNA413586 download
SRR6147057 SRP119557 GSM2806562 SINGLE PRJNA413586 download
SRR6147058 SRP119557 GSM2806563 SINGLE PRJNA413586 download
SRR6147059 SRP119557 GSM2806564 SINGLE PRJNA413586 download
SRR6147060 SRP119557 GSM2806565 SINGLE PRJNA413586 download
SRR6147061 SRP119557 GSM2806566 SINGLE PRJNA413586 download
SRR6147062 SRP119557 GSM2806567 SINGLE PRJNA413586 download
SRR6147063 SRP119557 GSM2806568 SINGLE PRJNA413586 download
SRR6147064 SRP119557 GSM2806569 SINGLE PRJNA413586 download
SRR6147065 SRP119557 GSM2806570 SINGLE PRJNA413586 download
SRR6147066 SRP119557 GSM2806571 SINGLE PRJNA413586 download
SRR6147067 SRP119557 GSM2806572 SINGLE PRJNA413586 download
SRR6147068 SRP119557 GSM2806573 SINGLE PRJNA413586 download
SRR6147069 SRP119557 GSM2806574 SINGLE PRJNA413586 download
SRR6147070 SRP119557 GSM2806575 SINGLE PRJNA413586 download
SRR6147071 SRP119557 GSM2806576 SINGLE PRJNA413586 download
SRR6147072 SRP119557 GSM2806577 SINGLE PRJNA413586 download
SRR6147073 SRP119557 GSM2806578 SINGLE PRJNA413586 download
SRR6147074 SRP119557 GSM2806579 SINGLE PRJNA413586 download
SRR6147075 SRP119557 GSM2806580 SINGLE PRJNA413586 download
SRR6147076 SRP119557 GSM2806581 SINGLE PRJNA413586 download
SRR6163645 SRP119679 4_6h_AF293_A549_I_h PAIRED PRJNA399754 download
SRR6163646 SRP119679 4_6h_AF293_A549_II_h PAIRED PRJNA399754 download
SRR6355795 SRP119679 9_16h_A549_I_h PAIRED PRJNA399754 download
SRR6379815 SRP126844 TNF 1 hour PAIRED PRJNA422567 download
SRR6379817 SRP126844 tnf 4 hours PAIRED PRJNA422567 download
SRR6379818 SRP126844 TNF 1 hour PAIRED PRJNA422567 download
SRR6379819 SRP126844 TNF TPCA-1 1 hour PAIRED PRJNA422567 download
SRR6379821 SRP126844 TNF TPCA-1 0 hour PAIRED PRJNA422567 download
SRR6379823 SRP126844 TNF TPCA-1 4 hours PAIRED PRJNA422567 download
SRR6379824 SRP126844 TNF TPCA-1 4 hours PAIRED PRJNA422567 download
SRR6379825 SRP126844 TNF TPCA-1 1 hour PAIRED PRJNA422567 download
SRR6379827 SRP126844 TNF MRT 1 hour PAIRED PRJNA422567 download
SRR6379831 SRP126844 TNF MRT 0 PAIRED PRJNA422567 download
SRR6379832 SRP126844 TNF MRT 4 hours PAIRED PRJNA422567 download
SRR6379833 SRP126844 TNF MRT 4 hours PAIRED PRJNA422567 download
SRR6379834 SRP126844 TNF MRT 4 hours PAIRED PRJNA422567 download
SRR6379835 SRP126844 TNF MRT 1 hour PAIRED PRJNA422567 download
SRR6379837 SRP126844 tnf 4 hours PAIRED PRJNA422567 download
SRR6413033 SRP127409 GSM2899082 SINGLE PRJNA427330 download
SRR6413036 SRP127409 GSM2899085 SINGLE PRJNA427330 download
SRR6413043 SRP127409 GSM2899092 SINGLE PRJNA427330 download
SRR6413046 SRP127409 GSM2899095 SINGLE PRJNA427330 download
SRR6413057 SRP127409 GSM2899106 SINGLE PRJNA427330 download
SRR6413067 SRP127409 GSM2899116 SINGLE PRJNA427330 download
SRR6413069 SRP127409 GSM2899118 SINGLE PRJNA427330 download
SRR6413075 SRP127409 GSM2899124 SINGLE PRJNA427330 download
SRR6788139 SRP133589 GSM3025097 PAIRED PRJNA436141 download
SRR6788140 SRP133589 GSM3025098 PAIRED PRJNA436141 download
SRR6788141 SRP133589 GSM3025099 PAIRED PRJNA436141 download
SRR6788142 SRP133589 GSM3025100 PAIRED PRJNA436141 download
SRR6788143 SRP133589 GSM3025101 PAIRED PRJNA436141 download
SRR6788144 SRP133589 GSM3025102 PAIRED PRJNA436141 download
SRR6788145 SRP133589 GSM3025103 PAIRED PRJNA436141 download
SRR6788146 SRP133589 GSM3025104 PAIRED PRJNA436141 download
SRR6788148 SRP133589 GSM3025106 PAIRED PRJNA436141 download
SRR6788149 SRP133589 GSM3025107 PAIRED PRJNA436141 download
SRR6788150 SRP133589 GSM3025108 PAIRED PRJNA436141 download
SRR6788151 SRP133589 GSM3025109 PAIRED PRJNA436141 download
SRR6788153 SRP133589 GSM3025111 PAIRED PRJNA436141 download
SRR6788154 SRP133589 GSM3025112 PAIRED PRJNA436141 download
SRR6788155 SRP133589 GSM3025113 PAIRED PRJNA436141 download
SRR6788156 SRP133589 GSM3025114 PAIRED PRJNA436141 download
SRR7085046 SRP119679 3_6h_A549_I_h PAIRED PRJNA399754 download
SRR7085067 SRP119679 3_6h_A549_III_h PAIRED PRJNA399754 download
SRR7085451 SRP119679 9_16h_A549_I_h PAIRED PRJNA399754 download
SRR7085452 SRP119679 9_16h_A549_II_h PAIRED PRJNA399754 download
SRR7085667 SRP119679 4_6h_AF293_A549_III_h PAIRED PRJNA399754 download
SRR7085747 SRP119679 5_6h_CEA10_A549_I_h PAIRED PRJNA399754 download
SRR7085748 SRP119679 5_6h_CEA10_A549_II_h PAIRED PRJNA399754 download
SRR7085752 SRP119679 5_6h_CEA10_A549_III_h PAIRED PRJNA399754 download

Copyright @ Hunan Provincial Key Lab on Bioinformatics

School of Computer Science and Engineering, Central South University, Changsha, Hunan Province, P.R. China