Data description for expression analysis

The RNA-seq gene expression data of all tissues/cell lines are downloaded from the DEE2 database, in which all data are processed with a unified pipeline. Following our preprocessing pipeline, the RNA-seq data are preprocessed and the retained datasets are used for building networks. The number of retained datasets and samples for each tissue is summarized below.



Tissue Datasets Samples Detail
Embryo 28 610 detail
Melanocyte 29 962 detail
Cancerous glia 13 406 detail
Bronchial epithelium 14 373 detail
B lymphocyte 33 768 detail
Neuron 29 683 detail
Neural progenitor 13 302 detail
Skin fibroblast 19 371 detail
NSCLC cell line 31 1097 detail
Colon 56 1210 detail
Skin 54 1541 detail
ALL cell line 46 1250 detail
Serum 10 179 detail
Kidney 29 517 detail
A549 13 264 detail
Neural stem cell 17 560 detail
Forebrain 15 540 detail
AML cell line 20 1435 detail
Pancreas 21 546 detail
HCT116 20 375 detail
HEK293 28 580 detail
CML cell line 11 765 detail
T lymphocyte 36 1241 detail
Urinary bladder 13 294 detail
Glia 18 568 detail
Intestine 15 326 detail
Bone marrow 31 1210 detail
MCF 44 988 detail
Bronchus 16 501 detail
Bladder 11 234 detail
Blood 111 6285 detail
Umbilical cord 15 366 detail
Prostate 35 671 detail
Bone 41 1383 detail
Macrophage 17 446 detail
Brain 47 1817 detail
Epidermis 27 909 detail
Adipose 11 653 detail
MCF7 35 722 detail
HELA 23 430 detail
Heart 12 761 detail
Liver 34 1078 detail
Unterine cervix 25 478 detail
Frontal cortex 14 630 detail
Lung 48 1325 detail
Ovary 14 297 detail
Embryonic stem cell 30 743 detail
Mammary gland 12 315 detail
Breast 70 2019 detail


Copyright @ Hunan Provincial Key Lab on Bioinformatics

School of Computer Science and Engineering, Central South University, Changsha, Hunan Province, P.R. China